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Perl Programming for Biologists

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Release : 2003-07-14
Genre : Medical
Kind : eBook
Book Rating : 599/5 ( reviews)

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Book Synopsis Perl Programming for Biologists by : D. Curtis Jamison

Download or read book Perl Programming for Biologists written by D. Curtis Jamison. This book was released on 2003-07-14. Available in PDF, EPUB and Kindle. Book excerpt: Working on the assumption that the reader has no formal training in programming, Perl Programming for Biologists demonstrates how Perl is used to solve biological problems. Each chapter opens with a set of learning objectives, provides numerous review questions and self-study exercises, and concludes with a bulleted summary of key points. The author incorporates numerous real-life examples throughout the text. Upon completing the book, readers are able to quickly perform such tasks as correcting recurring errors in spreadsheets, scanning a Fasta sequence for every occurrence of an EcoRI site, adapting other writers' scripts to one's own purposes, and most important, writing reusable and maintainable scripts that spare the rote repetition of code.

Beginning Perl for Bioinformatics

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Release : 2001-10-22
Genre : Computers
Kind : eBook
Book Rating : 472/5 ( reviews)

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Book Synopsis Beginning Perl for Bioinformatics by : James Tisdall

Download or read book Beginning Perl for Bioinformatics written by James Tisdall. This book was released on 2001-10-22. Available in PDF, EPUB and Kindle. Book excerpt: With its highly developed capacity to detect patterns in data, Perl has become one of the most popular languages for biological data analysis. But if you're a biologist with little or no programming experience, starting out in Perl can be a challenge. Many biologists have a difficult time learning how to apply the language to bioinformatics. The most popular Perl programming books are often too theoretical and too focused on computer science for a non-programming biologist who needs to solve very specific problems.Beginning Perl for Bioinformatics is designed to get you quickly over the Perl language barrier by approaching programming as an important new laboratory skill, revealing Perl programs and techniques that are immediately useful in the lab. Each chapter focuses on solving a particular bioinformatics problem or class of problems, starting with the simplest and increasing in complexity as the book progresses. Each chapter includes programming exercises and teaches bioinformatics by showing and modifying programs that deal with various kinds of practical biological problems. By the end of the book you'll have a solid understanding of Perl basics, a collection of programs for such tasks as parsing BLAST and GenBank, and the skills to take on more advanced bioinformatics programming. Some of the later chapters focus in greater detail on specific bioinformatics topics. This book is suitable for use as a classroom textbook, for self-study, and as a reference.The book covers: Programming basics and working with DNA sequences and strings Debugging your code Simulating gene mutations using random number generators Regular expressions and finding motifs in data Arrays, hashes, and relational databases Regular expressions and restriction maps Using Perl to parse PDB records, annotations in GenBank, and BLAST output

Perl Programming for Medicine and Biology

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Author :
Release : 2007
Genre : Biology
Kind : eBook
Book Rating : 338/5 ( reviews)

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Book Synopsis Perl Programming for Medicine and Biology by : Jules J. Berman

Download or read book Perl Programming for Medicine and Biology written by Jules J. Berman. This book was released on 2007. Available in PDF, EPUB and Kindle. Book excerpt: Written for biomedical professionals and hospital practitioners interested in creating their own programs, Perl Programming for Medicine and Biology, discusses and reviews biomedical data resources, data standards, data organization, medicolegal and ethical conduct for data miners, and grants-related data sharing responsibilities. It teaches readers the basic Perl programming skills necessary for collecting, analyzing, and distributing biomedical data and provides solutions to in-depth problems that face researchers and healthcare professionals. Non-technical "Background" sections open each chapter to help non-programmers easily comprehend programming procedures. Explanations are provided for the biomedical issues underlying the Perl scripts that follow, and examples of real-world implementation are provided. Perl Programming for Medicine and Biology will show you how to transform, merge, and examine large and complex databases with ease.

Bioinformatics Biocomputing and Perl

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Release : 2005-09-27
Genre : Medical
Kind : eBook
Book Rating : 456/5 ( reviews)

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Book Synopsis Bioinformatics Biocomputing and Perl by : Michael Moorhouse

Download or read book Bioinformatics Biocomputing and Perl written by Michael Moorhouse. This book was released on 2005-09-27. Available in PDF, EPUB and Kindle. Book excerpt: Bioinformatics, Biocomputing and Perl presents a modern introduction to bioinformatics computing skills and practice. Structuring its presentation around four main areas of study, this book covers the skills vital to the day-to-day activities of today’s bioinformatician. Each chapter contains a series of maxims designed to highlight key points and there are exercises to supplement and cement the introduced material. Working with Perl presents an extended tutorial introduction to programming through Perl, the premier programming technology of the bioinformatics community. Even though no previous programming experience is assumed, completing the tutorial equips the reader with the ability to produce powerful custom programs with ease. Working with Data applies the programming skills acquired to processing a variety of bioinformatics data. In addition to advice on working with important data stores such as the Protein DataBank, SWISS-PROT, EMBL and the GenBank, considerable discussion is devoted to using bioinformatics data to populate relational database systems. The popular MySQL database is used in all examples. Working with the Web presents a discussion of the Web-based technologies that allow the bioinformatics researcher to publish both data and applications on the Internet. Working with Applications shifts gear from creating custom programs to using them. The tools described include Clustal-W, EMBOSS, STRIDE, BLAST and Xmgrace. An introduction to the important Bioperl Project concludes this chapter and rounds off the book.

Perl for Exploring DNA

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Author :
Release : 2007
Genre : Computers
Kind : eBook
Book Rating : /5 ( reviews)

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Book Synopsis Perl for Exploring DNA by : Mark D. LeBlanc

Download or read book Perl for Exploring DNA written by Mark D. LeBlanc. This book was released on 2007. Available in PDF, EPUB and Kindle. Book excerpt: Publisher description

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