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Modern Phylogenetic Comparative Methods and Their Application in Evolutionary Biology

2014-07-29 Science
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Release : 2014-07-29
Genre : Science
Kind : eBook
Book Rating : 500/5 ( reviews)

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Book Synopsis Modern Phylogenetic Comparative Methods and Their Application in Evolutionary Biology by : László Zsolt Garamszegi

Download or read book Modern Phylogenetic Comparative Methods and Their Application in Evolutionary Biology written by László Zsolt Garamszegi. This book was released on 2014-07-29. Available in PDF, EPUB and Kindle. Book excerpt: Phylogenetic comparative approaches are powerful analytical tools for making evolutionary inferences from interspecific data and phylogenies. The phylogenetic toolkit available to evolutionary biologists is currently growing at an incredible speed, but most methodological papers are published in the specialized statistical literature and many are incomprehensible for the user community. This textbook provides an overview of several newly developed phylogenetic comparative methods that allow to investigate a broad array of questions on how phenotypic characters evolve along the branches of phylogeny and how such mechanisms shape complex animal communities and interspecific interactions. The individual chapters were written by the leading experts in the field and using a language that is accessible for practicing evolutionary biologists. The authors carefully explain the philosophy behind different methodologies and provide pointers – mostly using a dynamically developing online interface – on how these methods can be implemented in practice. These “conceptual” and “practical” materials are essential for expanding the qualification of both students and scientists, but also offer a valuable resource for educators. Another value of the book are the accompanying online resources (available at: http://www.mpcm-evolution.com), where the authors post and permanently update practical materials to help embed methods into practice.

Phylogenetic Comparative Methods in R

2022-07-12 Science
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Release : 2022-07-12
Genre : Science
Kind : eBook
Book Rating : 044/5 ( reviews)

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Book Synopsis Phylogenetic Comparative Methods in R by : Liam J. Revell

Download or read book Phylogenetic Comparative Methods in R written by Liam J. Revell. This book was released on 2022-07-12. Available in PDF, EPUB and Kindle. Book excerpt: An authoritative introduction to the latest comparative methods in evolutionary biology Phylogenetic comparative methods are a suite of statistical approaches that enable biologists to analyze and better understand the evolutionary tree of life, and shed vital new light on patterns of divergence and common ancestry among all species on Earth. This textbook shows how to carry out phylogenetic comparative analyses in the R statistical computing environment. Liam Revell and Luke Harmon provide an incisive conceptual overview of each method along with worked examples using real data and challenge problems that encourage students to learn by doing. By working through this book, students will gain a solid foundation in these methods and develop the skills they need to interpret patterns in the tree of life. Covers every major method of modern phylogenetic comparative analysis in R Explains the basics of R and discusses topics such as trait evolution, diversification, trait-dependent diversification, biogeography, and visualization Features a wealth of exercises and challenge problems Serves as an invaluable resource for students and researchers, with applications in ecology, evolution, anthropology, disease transmission, conservation biology, and a host of other areas Written by two of today’s leading developers of phylogenetic comparative methods

The Comparative Approach in Evolutionary Anthropology and Biology

2011-11-30 Science
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Release : 2011-11-30
Genre : Science
Kind : eBook
Book Rating : 980/5 ( reviews)

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Book Synopsis The Comparative Approach in Evolutionary Anthropology and Biology by : Charles L. Nunn

Download or read book The Comparative Approach in Evolutionary Anthropology and Biology written by Charles L. Nunn. This book was released on 2011-11-30. Available in PDF, EPUB and Kindle. Book excerpt: And when new fossils are found, such as those of the tiny humans of Flores, scientists compare these remains to other fossils and contemporary humans.

Phylogenies and the Comparative Method in Animal Behavior

1996 Animal behavior
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Release : 1996
Genre : Animal behavior
Kind : eBook
Book Rating : 104/5 ( reviews)

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Book Synopsis Phylogenies and the Comparative Method in Animal Behavior by : Emília P. Martins

Download or read book Phylogenies and the Comparative Method in Animal Behavior written by Emília P. Martins. This book was released on 1996. Available in PDF, EPUB and Kindle. Book excerpt: In the last ten years, the "comparative method" has been revolutionized by modern statistical ways of incorporating phylogenies into the design and analysis of comparative studies. The results of this revolution are particularly important in the study of animal behavior, which has relied on interspecific comparisons to infer universal trends and evolutionary patterns. The chapters of this edited volume consider the impact of modern phylogenetic comparative methods on the study of animal behavior and discuss the main issues that need to be considered in design and analysis of a comparative study, considers possible differences between the evolution of behavior and the evolution of morphology, and reviews how phylogenetic comparative studies have been used in certain areas of behavioral research.

Analysis of Phylogenetics and Evolution with R

2011-11-06 Science
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Release : 2011-11-06
Genre : Science
Kind : eBook
Book Rating : 430/5 ( reviews)

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Book Synopsis Analysis of Phylogenetics and Evolution with R by : Emmanuel Paradis

Download or read book Analysis of Phylogenetics and Evolution with R written by Emmanuel Paradis. This book was released on 2011-11-06. Available in PDF, EPUB and Kindle. Book excerpt: The increasing availability of molecular and genetic databases coupled with the growing power of computers gives biologists opportunities to address new issues, such as the patterns of molecular evolution, and re-assess old ones, such as the role of adaptation in species diversification. In the second edition, the book continues to integrate a wide variety of data analysis methods into a single and flexible interface: the R language. This open source language is available for a wide range of computer systems and has been adopted as a computational environment by many authors of statistical software. Adopting R as a main tool for phylogenetic analyses will ease the workflow in biologists' data analyses, ensure greater scientific repeatability, and enhance the exchange of ideas and methodological developments. The second edition is completed updated, covering the full gamut of R packages for this area that have been introduced to the market since its previous publication five years ago. There is also a new chapter on the simulation of evolutionary data. Graduate students and researchers in evolutionary biology can use this book as a reference for data analyses, whereas researchers in bioinformatics interested in evolutionary analyses will learn how to implement these methods in R. The book starts with a presentation of different R packages and gives a short introduction to R for phylogeneticists unfamiliar with this language. The basic phylogenetic topics are covered: manipulation of phylogenetic data, phylogeny estimation, tree drawing, phylogenetic comparative methods, and estimation of ancestral characters. The chapter on tree drawing uses R's powerful graphical environment. A section deals with the analysis of diversification with phylogenies, one of the author's favorite research topics. The last chapter is devoted to the development of phylogenetic methods with R and interfaces with other languages (C and C++). Some exercises conclude these chapters.

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